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		<title>What is chemical intuition?</title>
		<link>http://ashujo.wordpress.com/2011/07/19/what-is-chemical-intuition/</link>
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		<pubDate>Tue, 19 Jul 2011 12:18:00 +0000</pubDate>
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				<category><![CDATA[chemistry]]></category>

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		<description><![CDATA[Recently I read a comment by a leading chemist in which he said that in chemistry, intuition is much more important than in physics. This is a curious comment since intuition is one of those things which is hard to define but which most people who play the game appreciate when they see it. It [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ashujo.wordpress.com&amp;blog=1074294&amp;post=1933&amp;subd=ashujo&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p><a href="http://ashujo.files.wordpress.com/2011/07/5203607164_7e09a9a5f0_z.jpg"><img src="http://ashujo.files.wordpress.com/2011/07/5203607164_7e09a9a5f0_z.jpg?w=300" alt="" border="0" /></a><span style="font-size:medium;"><span style="font-family:georgia;">Recently I read a comment by a leading chemist in which he said that in chemistry, intuition is much more important than in physics. This is a curious comment since intuition is one of those things which is hard to define but which most people who play the game appreciate when they see it. It is undoubtedly important in any scientific discipline and certainly so in physics; Einstein for instance was regarded as the outstanding intuitionist of his age, a man whose grasp of physical reality unaided by mathematical analysis was unmatched. Yet I agree that &#8220;chemical intuition&#8221; is a phrase which you hear much more than &#8220;physical intuition&#8221;. When it comes to intuition, chemists seem to be more in the league of traders, geopolitical experts and psychologists than physicists.</span></p>
<p><span style="font-family:georgia;">Why is this the case? The simple reason is that in chemistry, unlike physics, armchair mathematical manipulation and theorizing can take you only so far. While armchair speculation and order-of-magnitude calculations can certainly be very valuable, no chemist can design a zeolite, predict the ultimate product of a complex natural product synthesis or list the biological properties that a potential drug can have by simply working through the math. As R B Woodward once <a href="http://wavefunction.fieldofscience.com/2011/02/woodward-on-difference-between.html">said</a> of his decision to pursue chemistry rather than math, </span><span style="font-style:italic;font-family:georgia;">in chemistry, ideas have to answer to reality.</span><span style="font-family:georgia;"> Chemistry much more than physics is an experimental science built on a foundation of rigorous and empirical models, and as the statistican George Box once memorably quipped, all models are wrong, but some are useful. It is chemical intuition that can separate the good models from the bad ones.</span></p>
<p><span style="font-family:georgia;">How then, to acquire chemical intuition? All chemists crave intuition, few have it. It&#8217;s hard to define it, but I think a good definition would be that of a quality that lets one skip a lot of the details and get to the essential result, often one that is counter intuitive. It is the art of asking the simple, decisive question that goes to the heart of the matter. As in a novel mathematical proof, a moment of chemical intuition commands an element of surprise. And as with a truly ingenious mathematical derivation, it should ideally lead us to smack our foreheads and ask why we could not think of something so simple before.</p>
<p>Ultimately when it comes to harnessing intuition, there can be no substitute for experience. Yet the masters of the art in the last fifty years have imparted valuable lessons on how to acquire it. Here are three I have noticed:</span></p>
<p><span style="font-style:italic;font-family:georgia;">1. Don&#8217;t ignore the obvious: </span><span style="font-family:georgia;">One of the most striking features of chemistry as a science is that very palpable properties like color, smell, taste and elemental state are directly connected to molecular structure. There is an unforgettably direct connection between the smell of </span><span style="font-style:italic;font-family:georgia;">cis-3-hexenol</span><span style="font-family:georgia;"> and that of freshly cut grass. Once you smell both independently it is virtually impossible to forget the connection. Chemists who are known for their intuition never lose sight of these simple molecular properties, and they use them as disarming filters that can cut through the complex calculations and the multimillion dollar chemical analysis. </span></p>
<p><span style="font-family:georgia;">I remember an anecdote about the chemist Harry Gray (an expert among other things on colored coordination complexes) who once deflated the predictions of some sophisticated quantum chemical calculation by simply asking what the color of the proposed compound was; apparently there was no way the calculations could have been right if the compound had a particular color. As you immerse yourself in laborious compound characterization, computational modeling and statistical significance, don&#8217;t forget what you can taste, touch, smell and see. As Pink Floyd said, this is all that your world will ever be.</span></p>
<p><span style="font-style:italic;font-family:georgia;">2. Get a feel for energetics: </span><span style="font-family:georgia;">The essence of chemistry can be boiled down to a fight unto death of countless factors that rally either for or against the free energy of a system. When you are designing molecules as anticancer agents, for hydrogen storage or solar energy conversion or as enzyme mimics, ultimately what decides whether they will work or not is energetics, how well they can stabilize and be stabilized and ultimately lower the free energy of the system. Intimate familiarity with numbers can help in these cases. Get a feel for the rough contributions made by hydrogen bonds, electrostatics, steric interactions and solvent influences. This is especially important for chemists working at the interface of chemistry and biology; remember, life is a game played within a <a href="http://wavefunction.fieldofscience.com/2008/10/unbearable-heat-capacity-of-being.html">3 kcal/mol</a> window and any insight that allows you to nail down numbers within this window can only help. The same goes for some other parameters like Van der Waals radii and bond lengths. Linus Pauling was lying in bed with a cold when he managed to build accurate models of the protein alpha helix, largely based on his unmatched feel for such numbers.</span></p>
<p><span style="font-family:georgia;">A striking case of insights acquired through thinking about energetics is illustrated by a story that Roald Hoffmann </span><a href="http://www.americanscientist.org/issues/issue.aspx?id=11868&amp;y=2011&amp;no=2&amp;content=true&amp;page=6&amp;css=print" style="font-family:georgia;">narrates</a><span style="font-family:georgia;"> in a recent issue of &#8220;American Scientist&#8221;. Hoffmann was theoretically investigating the conversion of graphene to graphane, which is the saturated counterpart of graphene, under high pressure. After having done some high-level calculations, his student came into his office and communicated a very counter-intuitive result; apparently graphane was more stable per CH group than the equivalent number of benzenes. What happened to all that discussion of unsaturation in aromatic rings contributing to unusual stability that we learnt in college? Hoffmann could not believe the result and his first reaction was to suspect that something must be wrong with the calculation.</p>
<p>Then, as he himself recalls, he leaned back in his chair, closed his eyes and brought half a century&#8217;s store of chemical intuition to bear on the problem. Ultimately after all the book-keeping had been done, it turned out that the result was a simple consequence of energetics; the energy gained in the formation of strong carbon-carbon bonds more than offset that incurred due to the loss of aromaticity. The fact that it took a Nobel Laureate some time to work out the result is not in any way a criticism but a resounding validation of thinking in terms of simple energetics. Chemistry is full of surprises- even for Roald Hoffmann- and that&#8217;s what makes it endlessly exciting.</span></p>
<p><span style="font-family:georgia;">Another example that comes to my mind is an </span><a href="http://pubs.acs.org/doi/abs/10.1021/ja993017u?prevSearch=%255Bauthor%253A%2BJames%2BSnyder%255D%2BNOT%2B%255Batype%253A%2Bad%255D%2BNOT%2B%255Batype%253A%2Bacs-toc%255D&amp;searchHistoryKey=" style="font-family:georgia;">old paper</a><span style="font-family:georgia;"> by my PhD advisor which refuted an observation indicating that a group in cyclohexane was purportedly </span><span style="font-style:italic;font-family:georgia;">axial</span><span style="font-family:georgia;">. In this case unlike the one above, the intuitive and commonly held principle- that substituents in cyclohexanes are equatorial- turned out to be the right one, again based on some relatively simple NMR-assisted computational energetic analysis. On the other hand, the same kind of thinking also led to the</span><a href="http://pubs.acs.org/doi/abs/10.1021/ja9934504" style="font-family:georgia;">discovery</a><span style="font-family:georgia;"> </span><span style="text-decoration:underline;font-family:georgia;"></span><span style="font-family:georgia;">that the C-F groups in substituted difluoro-piperidines are axial! Sometimes intuition leads to counter intuition, and sometimes it asserts itself.</span></p>
<p><span style="font-style:italic;font-family:georgia;">3. Stay in touch with the basics, and learn from other fields:</span><span style="font-family:georgia;"> This is a lesson that is often iterated but seldom practiced. An old professor of mine used to recommend flipping open an elementary chemistry textbook every day to a random page and reading ten pages from it. Sometimes our research becomes so specialized and we become so enamored of our little corner of the chemical world that we forget the big picture. Part of the lessons cited above simply involve not missing the forest for the trees and always thinking of basic principles of structure and reactivity in the bigger sense.</span></span>
<div><span style="font-size:medium;"><span style="font-family:georgia;"><br /></span></span></div>
<div><span style="font-size:medium;"><span style="font-family:georgia;">This also often involves keeping in touch with other fields of chemistry since an organic chemist never knows when a basic fact from his college inorganic textbook will come in handy. Most great chemists who were masters of chemical intuition could seamlessly transition their thoughts between different subfields of their science. This lesson is especially important when specialization has become so intense that it can sometimes lead to condescension toward fields other than your own. Part of the lesson also involves collaboration; what you don&#8217;t have you can at least partially borrow.</span></p>
<p><span style="font-family:georgia;">Ultimately if we want to develop chemical intuition, it is worth remembering that all our favorite molecules, whether metals, macrocyles or metalloproteases, are all part of the same chemical universe, obeying the same rules even if in varied contexts. Ultimately, no matter what kind of molecule we are interrogating, </span><span style="font-style:italic;font-family:georgia;">Wir sind alle chemikers</span><span style="font-family:georgia;">, every single one of us.</span></span></div>
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		<title>Lindau 2011: What do scientists do after winning the Nobel Prize?</title>
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		<pubDate>Wed, 29 Jun 2011 21:39:00 +0000</pubDate>
		<dc:creator>ashujo</dc:creator>
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		<description><![CDATA[Most of us know about the prize-winning work of this year&#8217;s Lindau Nobel Laureates, but how many of us keep track of what they did after winning the coveted honor? Scientists&#8217; lives after the Nobel Prize change dramatically. As former Lindau attendee Richard Ernst put it, they are now expected to be oracles on everything [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ashujo.wordpress.com&amp;blog=1074294&amp;post=1931&amp;subd=ashujo&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p><a href="http://ashujo.files.wordpress.com/2011/06/lindau.jpg"><img src="http://ashujo.files.wordpress.com/2011/06/lindau.jpg?w=200" alt="" border="0" /></a><span style="font-family:Georgia;font-size:medium;">Most of us know about the prize-winning work of this year&#8217;s Lindau Nobel Laureates, but how many of us keep track of what they did after winning the coveted honor? Scientists&#8217; lives after the Nobel Prize change dramatically. As former Lindau attendee Richard Ernst put it, they are now expected to be oracles on everything from international politics to religion, even when their knowledge of most other things is as limited as that of other people. There is no common thread; after winning the Prize, scientists&#8217; lives become as varied as those of all of us and in some cases a little more interesting. Here&#8217;s a short portrait of life after the Nobel Prize illustrated with a select few examples&#8230;</p>
<p><a href="http://www.scilogs.eu/en/blog/lindaunobel/2011-06-22/science-society-and-speculation-life-after-the-nobel-prize">Read the rest of the post on the Lindau blogs site&#8230;</a></span>
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		<title>Lindau 2011: From designing airplanes to designing proteins</title>
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		<pubDate>Wed, 29 Jun 2011 21:39:00 +0000</pubDate>
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		<description><![CDATA[An inspiration from the birth of aviation A few weeks ago I visited the small coastal town of Kitty Hawk in North Carolina. Kitty Hawk is where the Wright brothers made their epoch-making first powered flight. Big stones mark the start and end points of the flight. There is a huge monument on top of [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ashujo.wordpress.com&amp;blog=1074294&amp;post=1930&amp;subd=ashujo&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p><a href="http://ashujo.files.wordpress.com/2011/06/lindau.jpg"><img src="http://ashujo.files.wordpress.com/2011/06/lindau.jpg?w=200" alt="" border="0" /></a><span style="font-family:Georgia,serif;font-size:16px;"><span style="font-size:100%;"><span style="font-family:georgia;"><span style="font-weight:bold;">An inspiration from the birth of aviation</span></p>
<p>A few weeks ago I visited the small coastal town of Kitty Hawk in North Carolina. Kitty Hawk is where the Wright brothers made their epoch-making first powered flight. Big stones mark the start and end points of the flight. There is a huge monument on top of a hill where they took off and then there are three stones at varying distances at ground level. The three stones indicate the distances covered on every flight; the brothers clearly got better at flying on every attempt.</span></span>
<div><span style="font-size:100%;"><br /></span></div>
<div style="font-family:georgia;"><span style="font-size:100%;">The Wright brothers&#8217; story is inspiring not only because of the watershed in human history which they orchestrated but also because it shows the evolution of a technology at its best. The projects which the brothers undertook cost a few hundred dollars and should serve as a beacon of inspiration in this era of &#8220;big science&#8221; involving hundreds of millions of dollars. The brothers had a bicycle workshop in which they fashioned many of the components of their infant gliders. They drew inspiration from Otto Lillienthal who had been the first aviation pioneer to make successful glided flights; tragically, Lillienthal was killed on one of his flights, but not before saying </span><span style="line-height:19px;font-size:100%;"><span><span>&#8220;Kleine Opfer müssen gebracht werden!&#8221; (<i>&#8220;</i></span></span><span><span>Small sacrifices must be made!</span></span><span><span>&#8220;).</p>
<p>One of the most important lessons that the Wrights learnt from Lillienthal&#8217;s adventures was the great value of building &#8216;toy&#8217; models. Toy models start from the simplest possible systems which retain the essential features of a phenomenon and then work their way towards greater complexity. This philosophy has been used by many other pioneers of technology, including the scientists and engineers who made the moon landings possible&#8230;</p>
<p><a href="http://www.scilogs.eu/en/blog/lindaunobel/2011-06-20/the-challenges-and-allure-of-protein-design">Read the rest of the entry at the Lindau blogs website&#8230;</a></span></span></span></div>
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		<title>Lindau 2011: The beginning</title>
		<link>http://ashujo.wordpress.com/2011/06/29/lindau-2011-the-beginning-2/</link>
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		<pubDate>Wed, 29 Jun 2011 21:38:00 +0000</pubDate>
		<dc:creator>ashujo</dc:creator>
				<category><![CDATA[Lindau meeting]]></category>
		<category><![CDATA[Nobel Prize]]></category>

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		<description><![CDATA[This year I am privileged to be invited again to write for and attend the 61st Meeting of Nobel Laureates in Lindau, Germany. This year&#8217;s meeting is dedicated to Physiology or Medicine and the list of attendees provides a glimpse of the diversity and impact of biomedical research. These men and women have made enormous [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ashujo.wordpress.com&amp;blog=1074294&amp;post=1928&amp;subd=ashujo&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
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<div style="text-align:left;"><i>This year I am privileged to be invited again to write for and attend the<a href="http://www.lindau-nobel.org/PublicMeetingProgram.AxCMS?Meeting=279"> 61st Meeting of Nobel Laureates</a> in Lindau, Germany. This year&#8217;s meeting is dedicated to Physiology or Medicine and the <a href="http://www.lindau-nobel.org/PublicParticipants.AxCMS?Meeting=279&amp;Usergroup=6742">list</a> of attendees provides a glimpse of the diversity and impact of biomedical research. These men and women have made enormous contributions to our understanding of biological systems, from elucidating structures and pathways to providing tools of inestimable value. My first post just went up and I will be linking to others as I write more. Here&#8217;s the first one.</i></div>
<div></div>
<div><span class="Apple-style-span" style="color:rgb(51,51,51);line-height:18px;font-family:Verdana, Arial, Helvetica, sans-serif;font-size:12px;">
<p style="text-align:left;line-height:1.5;margin:8px 0 16px;padding:0;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="line-height:24px;font-size:medium;"><b>From messy to magical: Preparing for the future of medicine</b></span></span></p>
<p style="text-align:left;line-height:1.5;margin:8px 0 16px;padding:0;"><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;">In the early 1940s, as war raged over the continent, the British mathematician Freeman Dyson and the Indian physicist Harish Chandra were taking a walk in Cambridge. Harish Chandra was studying theoretical physics under the legendary Paul Dirac while Dyson was getting ready to spend a depressing time calculating bombing statistics at Bomber Command.</p>
<p>“I have decided to leave physics for mathematics”, quipped Harish Chandra. “I find physics messy, unrigorous, elusive”. “That’s interesting”, replied Dyson. “I am planning to leave mathematics for physics for exactly the same reason.” Leave their respective disciplines the two did, and both of them had highly distinguished careers in their new fields at the Institute for Advanced Study in Princeton.</p>
<p>I narrate this story because I can imagine almost exactly the same conversation taking place today between a biomedical researcher and any other kind of natural scientist. In fact it’s interesting to compare the status of medicine today with the status of physics when Dyson and Harish Chandra had their conversation. By 1940 physics had underwent a great revolution in the form of quantum mechanics and relativity. Yet there was much to be done and the “second revolution” was in the making. In retrospect it’s clear that very little was known about the strong and weak nuclear forces and nothing was known about the particle “zoo” that would be uncovered in the next few years. It took the efforts of many brilliant individuals to unify crucial concepts and make the whole structure look more consistent and complete.<br /></span></span></p>
<p style="text-align:left;line-height:1.5;margin:8px 0 16px;padding:0;"><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;">Medicine in the year 2011 is like physics in the year 1940. Just like physics it has had a recent revolutionary past in the advent of molecular biology. Just like physics there is much of it that is “messy, unrigorous, elusive”. And it’s exactly these qualities that make it a field ripe for another revolution. The future beckons for medicine and biology today as it did for physics in 1940.</span></span></p>
<p style="text-align:left;line-height:1.5;margin:8px 0 16px;padding:0;"><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;"><a href="http://lindau.nature.com/en/blog/lindaunobel/2011-06-06/from-messy-to-magical-preparing-for-the-future-of-medicine">Read more at the Lindau blogs website&#8230;</a></span></span></p>
<p></span></div>
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		<title>Putting the filosophy back into fysiks</title>
		<link>http://ashujo.wordpress.com/2011/06/18/putting-the-filosophy-back-into-fysiks/</link>
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		<pubDate>Sat, 18 Jun 2011 21:21:00 +0000</pubDate>
		<dc:creator>ashujo</dc:creator>
				<category><![CDATA[history of physics]]></category>
		<category><![CDATA[philosophy of science]]></category>
		<category><![CDATA[quantum mechanics]]></category>

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		<description><![CDATA[How the Hippies Saved Physics: Science, Counterculture, and the Quantum Revival- David KaiserDoes philosophy have a place in serious science? Many of the founders of modern physics certainly thought so. Einstein, Bohr, Heisenberg and Schrodinger were not just great scientists but they were equally enthusiastic and adept at pondering the philosophical implications of quantum theory. [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ashujo.wordpress.com&amp;blog=1074294&amp;post=1926&amp;subd=ashujo&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p><span style="font-size:medium;"><a href="http://ashujo.files.wordpress.com/2011/06/518d-t8b7ml.jpg"><img src="http://ashujo.files.wordpress.com/2011/06/518d-t8b7ml.jpg?w=199" alt="" border="0" /></a><a style="font-style:italic;" href="http://www.blogger.com/How%20the%20Hippies%20Saved%20Physics:%20Science,%20Counterculture,%20and%20the%20Quantum%20Revival-%20David%20Kaiser"><span style="font-family:georgia;">How the Hippies Saved Physics: Science, Counterculture, and the Quantum Revival- David Kaiser</span></a><br /></span><span style="font-size:medium;"><span style="font-family:georgia;"><br />Does  philosophy have a place in serious science? Many of the founders of   modern physics certainly thought so. Einstein, Bohr, Heisenberg and   Schrodinger were not just great scientists but they were equally   enthusiastic and adept at pondering the philosophical implications of   quantum theory. To some extent they were forced to confront such   philosophical questions because the world that they were discovering was   just so bizarre and otherworldly; particles could be waves and vice   versa, cats (at least in principle) could be alive and dead, particles   that were separated even by light years appeared to be able to   communicate instantaneously with each other, and our knowledge of the   subatomic world turned out to be fundamentally probabilistic. </span></p>
<p><span style="font-family:georgia;">However,  as quantum theory matured into a powerful tool for  calculation and  concrete application, the new generation of physicists  in general and  American physicists in particular started worrying less  about &#8220;what it  means&#8221; and much more about &#8220;how to use it&#8221;. American  physicists had  always been more pragmatic than their European  counterparts and after  World War 2, as the center of physics moved from  Europe to the United  States and as the Cold War necessitated a great  application of science  to defense, physicists turned completely from the  philosophizing type  to what was called the &#8220;shut up and calculate&#8221;  kind; as long as quantum  mechanics agrees spectacularly with experiment,  why worry about what  it means? Just learn how to use it. Yet this only  swept epistemological  questions under the rug. </span></span><span class="Apple-style-span" style="font-size:medium;"></p>
<p></span><span style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">Curiously,  there emerged in the 1970s a quirky and small group of  physicists in  the Bay Area who tried to resurrect the age of  philosopher-scientists.  In &#8220;How the Hippies Saved Physics&#8221;, David Kaiser  wonderfully tells the  very engaging story of this &#8220;Fundamental Fysiks&#8221;  group and how it kept  alive some of the deep philosophical questions  that had haunted the  founding fathers. The &#8220;Fysicists&#8221; came from a  variety of backgrounds,  but all of them had been dissatisfied; both by  the dismal job market  for physicists after the Cold War craze and more  importantly by the  purely practical approach toward physics which they  learnt in graduate  school. Interestingly they combined their deep  questions about physics  with the emerging hippie counterculture of the  60s and 70s and it&#8217;s  pretty clear from the book that they had great fun  doing this; after  all this was an age when non-conformity was encouraged. Discussions of  physics concepts blended seamlessly with  Eastern mysticism, forays into  LSD-induced mind experiments, New Age  workshops at the Esalen  Institute in California and meanderings into  telepathy, consciousness  and parapsychology. Books like Fritjof Capra&#8217;s  <a href="http://www.amazon.com/Tao-Physics-Exploration-Parallels-Mysticism/dp/1590308352/ref=tmm_pap_title_0">&#8220;The Tao of Physics&#8221; </a>which  explored parallels between modern physics and Eastern religions  only  helped the movement. The small group of physicists was also  fortunate  to get funding from some unlikely sources, including self-help  guru  Werner Erhard and even the CIA who was interested in possible   connections between ESP and physics. Not surprisingly, mainstream   physicists often ignored and sometimes actively condemned such   activities </span></span><span class="Apple-style-span" style="font-size:medium;"></p>
<p></span><span style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">However,  as Kaiser describes in this fascinating volume, this ragtag  group of  countercultural philosopher-scientists achieved at least one  crucial  goal; they kept questions about the philosophical implications  of  quantum theory alive at a time when most physicists eschewed and   disdained such questions. Gradually, they managed to get a handful of   mainstream physicists interested in their philosophizing. Much of the   connection of this philosophy to real physics centered about a   remarkable result called Bell&#8217;s theorem which essentially reinforced the   spooky properties of quantum systems by showing that information in   quantum systems can flow instantaneously between particles. Remarkably,   this seemingly otherworldly idea of &#8220;quantum entanglement&#8221; (which gave   some of the founding fathers heartburn) now lies at the foundation of   some of the most cutting-edge areas of modern physics, including quantum   computation and the new discipline of quantum information science.  What  was considered far-flung by mainstream physicists and kept alive  by the  Fundamental Fysiks group is now serious physics for many. In  fact, at  least a few physicists who put Bell&#8217;s theorem to experimental  test are  regarded as candidates for a Nobel Prize (these especially  include John  Clauser, Alain Aspect and Anton Zeilinger who shared the  prestigious  Wolf Prize- often a forerunner to the Nobel Prize- in  2010). </span></span><span class="Apple-style-span" style="font-size:medium;"></p>
<p></span><span style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">In  the end Kaiser wants to make the case that by keeping such   once-disparaged philosophical concepts alive, the Fundamental Fysicists   &#8220;saved physics&#8221;. I am a little skeptical of this claim. They certainly   managed to nurture and publicize the concepts, but it was the  harnessing  of these concepts by &#8220;real&#8221; physicists who were involved  with the nuts  and bolts of calculation and experiment that actually  saved the concepts  and kept them from turning into a purely  philosophical mishmash. In  addition, a lot of concepts that the New Age  physicists bandied about  belonged squarely in the realm of  pseudoscience and the trend continues;</span></span><span style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;"> people like Deepak Chopra commit gross violations of quantum mechanics on a daily basis. </span></span><span style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">Unfortunately  the line  between science and non-science can be thin and one of the  most  intriguing discussions in Kaiser&#8217;s book is this so-called  &#8220;demarcation  problem&#8221;. How does one know if today&#8217;s philosophy is  tomorrow&#8217;s cutting  edge science or just noisy mumbo-jumbo? It&#8217;s not  always easy to say.</span></span><span class="Apple-style-span" style="font-size:medium;"></p>
<p></span><span style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">Nonetheless,  I think Kaiser and the Fysicists make a really great  general case for  why philosophical questions in science have their own  place and should  not be rejected. For one thing, they are always  fascinating in  themselves and demonstrate the endless human quest for  meaning and  reality; as recent discussions indicate,  the philosophical conundrums  in physics have been far from answered and continue to  be explored  through even more bizarre ideas like parallel universes and  multiple  dimensions. And as this wonderful book shows, at least in some  cases  these discussions may lead to key advances by influencing  mainstream  physicists who validate them by subjecting them to the  ultimate arbiter  of truth in science- hard experiment.</span></span><span class="Apple-style-span" style="font-size:medium;"><br /></span>
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		<title>Lindau 2011: The beginning</title>
		<link>http://ashujo.wordpress.com/2011/06/06/lindau-2011-the-beginning/</link>
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		<pubDate>Mon, 06 Jun 2011 15:02:00 +0000</pubDate>
		<dc:creator>ashujo</dc:creator>
				<category><![CDATA[Lindau meeting]]></category>
		<category><![CDATA[Nobel Prize]]></category>

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		<description><![CDATA[This year I am privileged to be invited again to write for and attend the 61st Meeting of Nobel Laureates in Lindau, Germany. This year&#8217;s meeting is dedicated to Physiology or Medicine and the list of attendees provides a glimpse of the diversity and impact of biomedical research. These men and women have made enormous [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ashujo.wordpress.com&amp;blog=1074294&amp;post=1925&amp;subd=ashujo&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p><a href="http://ashujo.files.wordpress.com/2011/06/lindau.jpg"><img src="http://ashujo.files.wordpress.com/2011/06/lindau.jpg?w=200" border="0" alt="" /></a>
<div style="text-align:left;"><i>This year I am privileged to be invited again to write for and attend the<a href="http://www.lindau-nobel.org/PublicMeetingProgram.AxCMS?Meeting=279"> 61st Meeting of Nobel Laureates</a> in Lindau, Germany. This year&#8217;s meeting is dedicated to Physiology or Medicine and the <a href="http://www.lindau-nobel.org/PublicParticipants.AxCMS?Meeting=279&amp;Usergroup=6742">list</a> of attendees provides a glimpse of the diversity and impact of biomedical research. These men and women have made enormous contributions to our understanding of biological systems, from elucidating structures and pathways to providing tools of inestimable value. My first post just went up and I will be linking to others as I write more. Here&#8217;s the first one.</i></div>
<div></div>
<div><span class="Apple-style-span" style="color:rgb(51,51,51);line-height:18px;font-family:Verdana, Arial, Helvetica, sans-serif;font-size:12px;">
<p style="text-align:left;line-height:1.5;margin:8px 0 16px;padding:0;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="line-height:24px;font-size:medium;"><b>From messy to magical: Preparing for the future of medicine</b></span></span></p>
<p style="text-align:left;line-height:1.5;margin:8px 0 16px;padding:0;"><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;">In the early 1940s, as war raged over the continent, the British mathematician Freeman Dyson and the Indian physicist Harish Chandra were taking a walk in Cambridge. Harish Chandra was studying theoretical physics under the legendary Paul Dirac while Dyson was getting ready to spend a depressing time calculating bombing statistics at Bomber Command.</p>
<p>“I have decided to leave physics for mathematics”, quipped Harish Chandra. “I find physics messy, unrigorous, elusive”. “That’s interesting”, replied Dyson. “I am planning to leave mathematics for physics for exactly the same reason.” Leave their respective disciplines the two did, and both of them had highly distinguished careers in their new fields at the Institute for Advanced Study in Princeton.</p>
<p>I narrate this story because I can imagine almost exactly the same conversation taking place today between a biomedical researcher and any other kind of natural scientist. In fact it’s interesting to compare the status of medicine today with the status of physics when Dyson and Harish Chandra had their conversation. By 1940 physics had underwent a great revolution in the form of quantum mechanics and relativity. Yet there was much to be done and the “second revolution” was in the making. In retrospect it’s clear that very little was known about the strong and weak nuclear forces and nothing was known about the particle “zoo” that would be uncovered in the next few years. It took the efforts of many brilliant individuals to unify crucial concepts and make the whole structure look more consistent and complete.<br /></span></span></p>
<p style="text-align:left;line-height:1.5;margin:8px 0 16px;padding:0;"><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;">Medicine in the year 2011 is like physics in the year 1940. Just like physics it has had a recent revolutionary past in the advent of molecular biology. Just like physics there is much of it that is “messy, unrigorous, elusive”. And it’s exactly these qualities that make it a field ripe for another revolution. The future beckons for medicine and biology today as it did for physics in 1940.</span></span></p>
<p style="text-align:left;line-height:1.5;margin:8px 0 16px;padding:0;"><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;"><a href="http://lindau.nature.com/en/blog/lindaunobel/2011-06-06/from-messy-to-magical-preparing-for-the-future-of-medicine">Read more at the Lindau blogs website&#8230;</a></span></span></p>
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		<title>Time to make science popularization popular</title>
		<link>http://ashujo.wordpress.com/2011/06/03/time-to-make-science-popularization-popular/</link>
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		<pubDate>Fri, 03 Jun 2011 19:46:00 +0000</pubDate>
		<dc:creator>ashujo</dc:creator>
				<category><![CDATA[popular science]]></category>
		<category><![CDATA[science communication]]></category>

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		<description><![CDATA[When I was in college, “science popularization” was a dirty phrase. Popularizing science was considered the domain of the intellectual lightweights of science. You were interested in science popularization because you were not very good at “real” science itself. More disturbingly, this attitude was the corollary of a larger set of beliefs which saw “science” [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ashujo.wordpress.com&amp;blog=1074294&amp;post=1920&amp;subd=ashujo&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p><span class="Apple-style-span" style="line-height:19px;font-family:Georgia, 'Bitstream Charter', serif;font-size:15px;">
<p style="background-image:initial;background-attachment:initial;border-right-width:0;border-bottom-width:0;border-left-width:0;margin-right:0;margin-bottom:24px;margin-left:0;vertical-align:baseline;background-position:initial initial;background-repeat:initial initial;color:initial;border-style:initial;padding:0;"><span class="Apple-style-span" style="font-size:15px;"></span></p>
<p style="background-image:initial;background-attachment:initial;background-color:transparent;margin-right:0;margin-bottom:24px;margin-left:0;vertical-align:baseline;background-position:initial initial;background-repeat:initial initial;color:initial;border-style:initial;border-width:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:x-large;">W</span><span class="Apple-style-span" style="font-size:medium;">hen I was in college, “science popularization” was a dirty phrase. Popularizing science was considered the domain of the intellectual lightweights of science. You were interested in science popularization because you were not very good at “real” science itself. More disturbingly, this attitude was the corollary of a larger set of beliefs which saw “science” as tantamount to academic scientific research and nothing more. This view relegated not just popularization but to a lesser extent even teaching to the side. All this was quite surprising especially considering that Pune is the home of astrophysicist Jayant Narlikar, one of the foremost popularizers of science of his generation. But of course, even Narlikar’s “scipop” activities were admired because of his status as a first-rate scientist. The popularization was simply a side-product of his real scientific achievements.</span></span></p>
<p style="background-image:initial;background-attachment:initial;background-color:transparent;margin-right:0;margin-bottom:24px;margin-left:0;vertical-align:baseline;background-position:initial initial;background-repeat:initial initial;color:initial;border-style:initial;border-width:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">When I came to America two things struck me. First, that science popularization enjoyed vigorous participation and appreciation from both scientists and non-scientists. And second, that some of the clearest writing about science came from people without formal scientific backgrounds. There are indeed many famous science writers like Carl Sagan, Stephen Jay Gould, E O Wilson and Steven Weinberg who have impeccable scientific credentials, but there’s an equal number of others like Carl Zimmer, Robert Crease, Richard Rhodes, James Gleick, Rebecca Skloot and George Johnson who have written first-rate books on science and its history and philosophy, and whose grasp of basic science rivals that of experts in the field. With the rise of blogs and online media, science popularization has enjoyed an even bigger audience and entire conferences like ScienceOnline are organized and attended by science writers and journalists who are fundamentally science popularizers. I attended </span></span><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><a href="http://scienceonline2011.com/" style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,102,204);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">ScienceOnline 2011</span></a></span><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;"> this year and was very impressed by the scientific passion and drive for science communication that I saw in all the non-scientists attending the conference. Most of these people had basic degrees in science but very few of them were professional scientists.</span></span></span></p>
<p style="background-image:initial;background-attachment:initial;background-color:transparent;margin-right:0;margin-bottom:24px;margin-left:0;vertical-align:baseline;background-position:initial initial;background-repeat:initial initial;color:initial;border-style:initial;border-width:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">In this post I want to address the troubling attitude about science popularization that existed among my fellow students in college. I already consider my college years a thing of the past, so recent college graduates should definitely voice their observations and opinions in the comments section. Have things changed?</span></span></p>
<p style="background-image:initial;background-attachment:initial;background-color:transparent;margin-right:0;margin-bottom:24px;margin-left:0;vertical-align:baseline;background-position:initial initial;background-repeat:initial initial;color:initial;border-style:initial;border-width:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">As I noted above, the real problem with the attitude toward science popularization is that it is endemic of a more troubling larger view of science as being equivalent to research and nothing else. But this view is just plain wrong. Even a cursory glance at the history of science reveals that while research has been the primary driving force within science, teaching, scientific funding, scientific collaborations and even rivalries, the impact of social factors on the direction of research and yes…science popularization, have all played a key role in science’s transformation of the modern world. This history reveals a simple fact that is sometimes forgotten; science is very much a social activity. The image of the lone scientist toiling away in his lab and making a great discovery with immediate impact on society was never really true, and is not true at all in this era of expensive science, international collaborations and interdisciplinary research. These days it’s not enough to have a great idea; one needs to sell it to academic institutions, government agencies, private corporations and other funding bodies.</span></span></p>
<p style="background-image:initial;background-attachment:initial;background-color:transparent;margin-right:0;margin-bottom:24px;margin-left:0;vertical-align:baseline;background-position:initial initial;background-repeat:initial initial;color:initial;border-style:initial;border-width:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">But most importantly, one needs to sell it to the public. And this is true even if the sale is not actually conducted from a park bench by every individual scientist. The sale is necessary because not only has the majority of scientific research in history been funded from the public coffer but because that funding will stop flowing if the public is not convinced of the value of research. We are already seeing this happening in the US. A country which has been the largest public supporter of science until now is struggling to hold on to the public purse strings through its government agencies, in part because of a fundamentally bad economy but also because public support for basic science has been increasingly tainted by multiple factors including the declining quality of education, fundamentalist religion and a growing inability to separate long-term prosperity from short-term benefits.</span></span></p>
<p style="background-image:initial;background-attachment:initial;background-color:transparent;margin-right:0;margin-bottom:24px;margin-left:0;vertical-align:baseline;background-position:initial initial;background-repeat:initial initial;color:initial;border-style:initial;border-width:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">The only solution to this problem is better science communication. No number of brilliant scientific research ideas by themselves are ever going to reach the public and solve the problem if they are not presented in a digestible form. In that sense, science “popularization” is really nothing but science “communication”, although the former entails fancier pitches. Hopefully the latter word conveys a much bigger and obvious sense of urgency. Thus henceforth I will refer to science popularization as science communication.</span></span></p>
<p style="background-image:initial;background-attachment:initial;background-color:transparent;margin-right:0;margin-bottom:24px;margin-left:0;vertical-align:baseline;background-position:initial initial;background-repeat:initial initial;color:initial;border-style:initial;border-width:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">Once the key dependence of scientific support on a public that mostly is not formally scientifically educated becomes clear, the important of science communication cannot be underestimated. Communicate science, otherwise doing science will slowly but surely become an uphill battle. My friends who were erstwhile scientists should have realized that their future as science doers depends in an important way on the science communicators that they disparaged. Perhaps that should have generated more respect for the communicators.</span></span></p>
<p style="background-image:initial;background-attachment:initial;background-color:transparent;margin-right:0;margin-bottom:24px;margin-left:0;vertical-align:baseline;background-position:initial initial;background-repeat:initial initial;color:initial;border-style:initial;border-width:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">Indeed, even within science the importance of “explanation” has been widely recognized. Scientists who were masters of explanation may not always be as well-known as the movers and shakers of science but within the community their importance is unquestioned. Most people won’t recognize the name of Harvard physicist</span></span><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><a href="http://en.wikipedia.org/wiki/Sidney_Coleman" style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,102,204);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;"> </span></a><a href="http://en.wikipedia.org/wiki/Sidney_Coleman" style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,102,204);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">Sidney Coleman</span></a></span><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;"> who contributed much more to science by way of teaching, critiquing and explaining than he did through original research. Robert Oppenheimer was similar. At the height of his powers, Oppenheimer once said that the business of theoretical physicists was to explain to each other what they could not understand. Niels Bohr, a scientist who had an almost maddening obsession to state scientific facts accurately, used to stress to his brilliant students and colleagues that they could not claim to have understood the thorny subtleties of quantum mechanics if they could not explain them to each other in “plain language”. Richard Feynman quipped that one could not really hope to have understood something if he or she were unable to explain it to the average layman on the street. It may not be obvious, but all these scientists were implicitly extolling the key value in science of what we are calling science “popularization”.</span></span></span></p>
<p style="background-image:initial;background-attachment:initial;background-color:transparent;margin-right:0;margin-bottom:24px;margin-left:0;vertical-align:baseline;background-position:initial initial;background-repeat:initial initial;color:initial;border-style:initial;border-width:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">But assuming that my friends had understood the importance of communication, that may have still led them to their second misunderstanding; that only scientists who are accomplished in research are capable of the best scientific communication. As I have noted before, even a factual examination tells us otherwise; there are as many first-rate formally untrained science communicators as there are trained ones. This leads right away to the larger fallacy stated above; the assumption that knowing or doing science necessarily means spending all your time in actual scientific research.</span></span></p>
<p style="background-image:initial;background-attachment:initial;background-color:transparent;margin-right:0;margin-bottom:24px;margin-left:0;vertical-align:baseline;background-position:initial initial;background-repeat:initial initial;color:initial;border-style:initial;border-width:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">It’s important to spend some time discussing this fallacy since it also implicitly assumes that being steeped in the fundamentals, getting trained at the best universities or under the best scientists or being the valedictorian of your class are all equivalent to great scientific creativity and necessarily imply an actual research career. This is not the case at all, not just among non-scientists but even among scientists. As the case of Coleman and Oppenheimer reveals, the history of science reveals a multitude of (largely unsung) first-rate scientific “critics”, those who had an excellent grasp of their field but who could not, for one reason or other, achieve creative genius commensurate with their intellect. But Coleman and Oppenheimer were still exceptional scientists. How about science journalists who graduated with degrees in history, english and philosophy and then penned top-notch scientific volumes? The bigger point really is that science, just like many other things, is basically a set of complex ideas that can be digested by virtually anyone if they really apply their mind to it. People who can understand the tortuous meanderings of politics or the vagaries of sports statistics really shouldn’t have much problem understanding scientific basics, and this is proven for example by people who have edited excellent scientific entries on Wikipedia. Most of these people lack formal scientific training and yet have a knowledge of many scientific ideas that rivals that of the best scientists. And yet are we going to cast them aside because they are not professional scientists and will not win the Nobel Prize? There’s another key point; people may sometimes realize relatively late in their career that their real talents lie in other aspects of science like teaching and communication and not research. In fact this happens all the time (and we should be honest enough to own up to it) since many of us don’t really know what we are truly good at until late in our career. Should we then just give up these other scientific activities because we are supposed to fit within only one narrow box? Would we have dissuaded Isaac Asimov (“The Great Explainer”) from writing all those wonderful science books because he was not publishing top scientific papers? Such thinking reflects a very impoverished view of the institution of science and its role in society.</span></span></span></p>
<p style="background-image:initial;background-attachment:initial;background-color:transparent;margin-right:0;margin-bottom:24px;margin-left:0;vertical-align:baseline;background-position:initial initial;background-repeat:initial initial;color:initial;border-style:initial;border-width:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">The real big truth is that not only can you understand science very well without being a great scientist but tha</span></span><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">t </span></span><em><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">there is nothing wrong with it</span></span></em><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">.</span></span><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;"> Every field needs its critics, explainers, teachers and creators. As described above, science has always been a multifaceted social activity, and it is unreasonable to assume that anyone who is competent to delve into one of its many corners should also be competent enough to delve into any other.</span></span></span></span></p>
<p style="background-image:initial;background-attachment:initial;background-color:transparent;margin-right:0;margin-bottom:24px;margin-left:0;vertical-align:baseline;background-position:initial initial;background-repeat:initial initial;color:initial;border-style:initial;border-width:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">We live in an age where more people believe in astrology and ghosts than in evolution. In this age the importance of science communication is as or even more relevant than that of actual research, whether this communication is done by scientists or anyone else. When you are trying to discover antibiotics against rapidly evolving bacteria or viruses and when the public which ultimately funds your research is skeptical of this very evolution, you better realize the key role that the communicators of science are going to play in helping you achieve your goals. None of the great ideas that are created by “real” scientists are ever going to have an impact if they are going to reach ignorant and closed minds. Nor are most scientists involved in research going to have the time necessary to communicate science on a regular basis. On the other hand, most people can grasp and appreciate scientific facts when these facts are carefully and patiently communicated by dedicated professionals.</span></span></p>
<p style="background-image:initial;background-attachment:initial;background-color:transparent;margin-right:0;margin-bottom:24px;margin-left:0;vertical-align:baseline;background-position:initial initial;background-repeat:initial initial;color:initial;border-style:initial;border-width:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;">In such cases, it’s best to leave communication to those who do it best and nurture and encourage their potential. We owe them a lot. It does not matter whether they are actual scientists or writers or just scientifically minded members of the public. Science is inherently a social phenomenon accessible to anyone with an open mind; as Oppenheimer put it, what we don’t understand we need to explain to each other. We want to get the message across. The identity of the messenger should not matter.</span></span></span></p>
<p style="background-image:initial;background-attachment:initial;background-color:transparent;margin-right:0;margin-bottom:24px;margin-left:0;vertical-align:baseline;background-position:initial initial;background-repeat:initial initial;color:initial;border-style:initial;border-width:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span style="background-image:initial;background-attachment:initial;background-color:transparent;vertical-align:baseline;color:rgb(0,0,0);background-position:initial initial;background-repeat:initial initial;border-color:initial;border-style:initial;border-width:0;margin:0;padding:0;"><span class="Apple-style-span" style="font-size:medium;"><i>Originally posted at </i><a href="http://www.criticaltwenties.in/sciencetechnology/time-to-make-science-popularization-popular"><i>Critical Twenties</i></a></span></span></span></p>
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		<title>One more thing we can learn from Linus Pauling</title>
		<link>http://ashujo.wordpress.com/2011/04/30/one-more-thing-we-can-learn-from-linus-pauling/</link>
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		<pubDate>Sat, 30 Apr 2011 22:27:00 +0000</pubDate>
		<dc:creator>ashujo</dc:creator>
				<category><![CDATA[Linus Pauling]]></category>
		<category><![CDATA[philosophy of science]]></category>

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		<description><![CDATA[What makes a successful scientist? The question is hard to answer, not because there is no general consensus but because the precise contribution of specific factors in individual cases cannot always be teased out. Intelligence is certainly an important feature but it can manifest itself in myriad ways. Apart from this, having a good nose [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ashujo.wordpress.com&amp;blog=1074294&amp;post=1912&amp;subd=ashujo&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<div class="separator" style="clear:both;text-align:center;"><a href="http://ashujo.files.wordpress.com/2011/04/lp.jpg" style="clear:left;float:left;margin-bottom:1em;margin-right:1em;"><img border="0" height="264" src="http://ashujo.files.wordpress.com/2011/04/lp.jpg?w=320&#038;h=264" width="320" /></a></div>
<p><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:x-large;">W</span>hat makes a successful scientist? The question is hard to answer, not because there is no general consensus but because the precise contribution of specific factors in individual cases cannot always be teased out. Intelligence is certainly an important feature but it can manifest itself in myriad ways. Apart from this, having a good nose for important problems is key. Perhaps most important is the ability to persevere in the face of constant frustration and discouragement. And then there is luck, that </span></span><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;">haphazard driving force whose blessings are unpredictable but can be discerned by Alexander Fleming&#8217;s famous &#8220;prepared minds&#8221;.</p>
<p>But aside from these determinants, one factor stands out which may not always be obvious because of it&#8217;s negative connotation; and that is the good sense to realize one&#8217;s weaknesses and the willingness to give up and marshal one&#8217;s resources into a more productive endeavor. Admitting one&#8217;s weaknesses is understandably an unpleasant task; nobody wants to admit what they are not good at, especially if they have worked at it for years. That kind of attitude does not get you job offers or impress interviewers. Yet being able to admit what qualities you lack can make your life take a radically successful direction. And lest we think that only mere mortals have to go through this painful process of periodic self-evaluation and subsequent betterment, we can be rest assured. It was none other than Linus Pauling who went through this soul-searching. And we are all the wiser for his decision.</p>
<p>When Pauling graduated from Oregon State University in 1922, he had already shown great promise. At that point he had had an excellent overall education in mathematics and physics and compared to his peers in the United States was mathematically quite outstanding. In 1926 he won a Guggenheim fellowship to study in Europe under the tutelage of Arnold Sommerfeld in Munich, with trips to the great centers of physics in Copenhagen, Gottingen and Zurich included as part of the package. There Pauling met the founders of quantum mechanics, almost all of whom were about the same age, and realized that maybe his talents in physics and mathematics were not as great as he thought. There is a story, probably apocryphal, that the famously acerbic Pauli dismissed one of his papers on quantum mechanics with two short words- &#8220;Not interesting&#8221;.</span></span>
<div><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;"><br /></span></span></div>
<div><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;">At this point Pauling made what was one of the the wisest decisions of his life; he decided to focus not on physics but on chemistry. He swallowed his frustration at being beaten by the best and brightest of his generation in physics and realized the great value of striking out into new territory. Why? Because his mathematical and analytical abilities, while being of considerable value in physics, would be of wholly unique import in chemistry. At that point and to some extent even today, gifted mathematicians and quantitative thinkers are quite common in physics but less so in chemistry and biology. That is precisely what makes them more valuable in the latter disciplines. In addition, Pauling had always had an empirical and experimental bent, demonstrated by his earlier research in crystallography. So chemistry it was, and the rest is history. Pauling ended up making contributions to chemistry whose significance easily paralleled that of contributions made by Heisenberg, Pauli, Dirac and Schrodinger to physics.</span></span></div>
<div><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;"><br /></span></span></div>
<div><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;">There are two key lessons to be drawn from Pauling&#8217;s story. The first lesson is to know when to let go, to know what path on the famed fork not to take. History would likely have been quite different if Pauling had decided to be stubborn and spent the rest of his career trying to outcompete his fellow theoretical physicists. But the bigger lesson is extremely valuable for scientists wanting to make discoveries. Take a skill-set which is valuable but not groundbreaking in one discipline, and then apply it to another discipline where it will lead to novel insights and real breakthroughs. Or to put in another way, </span></span><i><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;">move from a crowded field where you may share your particular talent with dozens of others to one which is sparser and where your talent will be more unique, productive and appreciated. <span class="Apple-style-span" style="font-style:normal;">The other related lesson is to capitalize on </span>pairs<span class="Apple-style-span" style="font-style:normal;"> of skills, each of which by itself may not be unique but whose combination turns out to be explosive in a particular field. For instance Pauling combined his deep grounding in physics with an encyclopedic memory and a remarkably wide knowledge of chemistry&#8217;s empirical facts. There were a few chemists who could marshal one or the other talent, but almost nobody could serve up Pauling&#8217;s powerful one-two punch. One can find similar analogies in combinations of diverse skills like computer science and molecular biology, or electrical engineering and neuroscience.</span></span></span></i></div>
<div><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;"><br /></span></span></div>
<div><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;">The history of science abounds with success stories stemming from this kind of recipe. Physicists venturing into biology constitute the best example. Francis Crick was a good physicist, but he probably would not have become a great one had he stayed in physics. Instead Crick had the wisdom to realize the value of applying his physicist&#8217;s mind to problems in biology and became one of the greatest biologists of the century. Walter Gilbert trained under the theoretical physics virtuoso Julian Schwinger and would have been a first-rate physicist, but applying his talents to biology enabled him to become one of the founders of molecular biology. There are also more exotic examples. The quantum physicist Tjalling Koopmans who fathered a well-known theorem in quantum chemistry did so well in econometrics that he won a Nobel Prize. In fact just like biology, economics has been another field which has been thoroughly enriched by thinkers who would have been good mathematicians or physicists but who became great economists (although the application of strict mathematical modeling in economics can lead to a world of pain). There are more local and specialized examples too. A professor of mine who is world-renowned in the physical organic chemistry of surfactants and lipids told me that he considered working in protein chemistry but realized that the field was too crowded; lipids, on the other hand, were under-explored and could benefit from exactly the kind of talents he has.</span></span></div>
<div><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;"><br /></span></span></div>
<div><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;">This is precisely the reason why biology is such a fertile playing field for outsiders of all stripes, from biologists and computer scientists to engineers. The kind of complex systems that biology deals with can only be unraveled through a variety of talents which people from diverse disciplines bring to the table. On one hand you need reductionist, quantitative scientists to set biology on a rigorous theoretical basis but you also need &#8216;higher-level&#8217; thinkers who can tie together threads from disparate empirical phenomena. That&#8217;s why both mathematicians and doctors continue to make valuable contributions to the field. The same can be said of chemistry. Quantum chemists like Pauling did much to root chemistry in physics, yet the sheer complexity of chemistry (after all the Schrodinger equation can be solved exactly for no atom bigger than hydrogen) demands more intuitive thinkers who can devise approximations and include empirical parameters to improve chemical prediction. Similarly, organic chemists like Stuart Schreiber and Peter Schultz were excellent synthetic chemists, but it was in the application of synthetic chemistry to biology that they found unexplored terrain and great riches.</span></span></div>
<div><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;"><br /></span></span></div>
<div><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;">The lesson for young scientists seems to be clear. The most explosive discoveries can result from applying talents suitable for one field to a whole new different field. And perhaps this is not surprising. Nature is not hostage to the boundaries of disciplinary convenience devised by fallible human beings and does not divide itself into rigid compartments titled &#8220;Physics&#8221;, &#8220;Biology&#8221;, &#8220;Approximation&#8221; or &#8220;Analytical Solutions&#8221;. Nature encompasses phenomena whose analysis spans a continuum. It is hardly surprising then that she yields her secrets best to those who are more than willing to use each and every tool of analysis to criss-cross her myriad domains.</span></span></div>
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		<title>Dirac, Bernstein, Weinberg and the limits of reductionism</title>
		<link>http://ashujo.wordpress.com/2011/04/20/dirac-bernstein-weinberg-and-the-limits-of-reductionism/</link>
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		<pubDate>Wed, 20 Apr 2011 01:49:00 +0000</pubDate>
		<dc:creator>ashujo</dc:creator>
				<category><![CDATA[reductionism]]></category>

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		<description><![CDATA[Jeremy Bernstein is a physicist and science writer who has worked with some of the leading physicists of the twentieth century and has penned highly engaging volumes about science, scientists and society which I have enjoyed reading. I was thus disappointed to read his review of a new book on quantum theory by Jim Baggott [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ashujo.wordpress.com&amp;blog=1074294&amp;post=1911&amp;subd=ashujo&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p><a href="http://ashujo.files.wordpress.com/2011/04/diracb.jpg"><img src="http://ashujo.files.wordpress.com/2011/04/diracb.jpg?w=300" border="0" alt="" /></a>
<div><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:x-large;">J</span>eremy Bernstein is a physicist and science writer who has worked with some of the leading physicists of the twentieth century and has penned highly engaging <a href="http://www.amazon.com/Jeremy-Bernstein/e/B000APDBXI/ref=sr_ntt_srch_lnk_1?qid=1303262612&amp;sr=1-1">volumes</a> about science, scientists and society which I have enjoyed reading. I was thus disappointed to read his review of a </span></span><a href="http://online.wsj.com/article/SB10001424052748704662604576202572029439118.html"><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;">new book</span></span></a><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;"> on quantum theory by Jim Baggott in the Wall Street Journal which opens thus:</span></span></div>
<div><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;"><br /></span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;"><i>In 1929, theoretical physicist Paul Dirac announced: &#8220;The general theory of quantum mechanics is now complete. . . . The underlying physical laws necessary for the mathematical theory of a large part of physics and the whole of chemistry are thus completely known.&#8221; The discipline at the point was four years old. Dirac himself was just 27. But eight decades later, we see that his optimistic evaluation was too modest. In addition to a &#8220;large part of physics and the whole of chemistry,&#8221; the theory now is extended to a significant part of biology, essentially all of electronics and nuclear physics, and a large part of astrophysics and cosmology.</i></span></span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;font-family:Arial, Helvetica, sans-serif;font-size:13px;"><br /></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">Really? A significant part of biology and the whole of chemistry? Both chemists and ecologists may be interested to know this. Let&#8217;s take stock of this viewpoint since it highlights a quote by Dirac which has been marshaled all too often in support of reductionism. It&#8217;s time to put the quote in context. Paul Dirac was one of the greatest scientists of the twentieth century and perhaps of all time, but he was no chemist or biologist. He made that statement about quantum mechanics in 1929 when quantum mechanics was at the height of its powers. The complete theory had just been developed by Heisenberg, Born, Schrodinger, Dirac and others and it had turned into physics&#8217;s crowning achievement. At the same time scientists like Pauling and Slater were applying the theory to chemistry. Suddenly the world seemed to be at physicists&#8217; feet and there seemed to be no limit to what physics could achieve.</span></span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;"><br /></span></span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">But this was not the case. The optimism about reductionism endured for the next couple of decades when physicists made monumental contributions to chemistry and molecular biology. And yet the waning years of the millennium indicated that the reach of reductionism was distinctly limited. We were just getting warmed up. As we made forays into expansive fields of chemistry and biology like self-assembly, chemical biology, population genetics, ecology, systems biology and neuroscience, it became clear that the essence of complex systems was <i>emergence</i>. Emergent properties seemed to demand understanding <a href="http://wavefunction.fieldofscience.com/2011/02/difference-between-chemistry-and.html">at their own levels</a> and could not be reduced to interactions between particles and fields. At the level of every science there emerged foundational laws, </span></span></span><span class="Apple-style-span" style="line-height:19px;font-family:georgia;font-size:medium;">not reducible to deeper principles, </span><span class="Apple-style-span" style="line-height:19px;font-family:georgia;font-size:medium;">that served as the bedrock for that particular science. Today, as we encounter new horizons in the study of signaling networks, brain plasticity and chaotic ecological systems, it&#8217;s clear that we will have to find and formulate fundamental laws specific to every system and science. No, if anything, Dirac&#8217;s statement was not too modest but too ambitious; </span><span class="Apple-style-span" style="line-height:19px;font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">as spectacular as its predictions have been, </span></span><span class="Apple-style-span" style="line-height:19px;font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">&#8220;a significant part of biology&#8221; and chemistry cannot be explained on the basis of quantum theory.</span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;"><br /></span></span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">In fact, although I am not an expert in cosmology, the extension of quantum predictions even to cosmology seems surprising to me. Isn&#8217;t gravity the other dominant force that needs to be taken into account when formulating cosmological explanations? And isn&#8217;t the welding of quantum theory and gravity the great unsolved problem of physics? To me the inclusion of large parts of cosmology and astrophysics under the quantum fold seems premature.</span></span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;"><br /></span></span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">Interestingly, this abiding interest in reductionist statements reminds me a of minor debate about reductionism between Freeman Dyson and Steven Weinberg that took place in the 90s. Dyson who has been critical of reductionism for a while penned an expressive piece arguing against reductionist philosophy in the New York Review of Books. In reply, Weinberg who has been an arch reductionist replied with his own spirited rebuttal. This rebuttal has been discussed in Weinberg&#8217;s engaging collection of essays <a href="http://www.amazon.com/Facing-Up-Science-Cultural-Adversaries/dp/0674011201/ref=sr_1_15?s=books&amp;ie=UTF8&amp;qid=1303261223&amp;sr=1-15">&#8220;Facing Up: Science and its Cultural Adversaries&#8221;</a>.</span></span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;"><br /></span></span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">Weinberg defined what he thought were two distinct critiques of reductionism. One was the critique of reductionism as a <i>working principle</i>. The other was a more fundamental, philosophical critique of reductionism as being unable to account for higher-order phenomena even <i>in principle</i>. Weinberg thus was making a distinction between reductionism in practice and reductionism in principle. According to him, scientists like Dyson who criticized reductionism really had a problem with the former manifestation of reductionism, as a working principle that did not really allow them to solve problems in chemistry, biology, economics or psychology. In contrast, reductionism in principle was alive and well and was being the unwitting victim of the anti-reductionists&#8217; axe. In essence Weinberg was saying that, sure, even if quarks cannot directly help you to solve the mysteries of chromosomes, they still surely account for chromosomal properties in principle.</span></span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;"><br /></span></span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">But to me such a distinction is meaningless beyond a point. The working scientist in his or her everyday scientific life really only cares about reductionism as a working principle, not as final causation. The fact that quarks can account for chromosomes in principle is not very consequential; a biologist could care less if there were goblins manipulating the fundamental constituents of biological systems. In addition, a lot of biology and chemistry progresses through the construction of models which are not even required to reflect the presence of the very fundamental laws. At the very least, the extolling of reductionism as being able to ultimately account for all kinds of phenomena is a trivial statement; it&#8217;s like saying that everything is made out of atoms. So what? That hardly helps us cure cancer.</span></span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;"><br /></span></span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">Ultimately, I suspect the argument may be more about semantics, about the meanings of the words &#8220;explain&#8221; and &#8220;account for&#8221;. But the last word actually belongs to Paul Dirac. In his quote, Bernstein left out something crucial that Dirac said. Yes, Dirac did seem to claim that quantum mechanics could explain &#8220;the whole of chemistry&#8221;, but he also said later that</span></span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;"><br /></span></span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">&#8220;&#8230;<i>T</i></span></span></span><span class="Apple-style-span" style="line-height:19px;"><i><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">he difficulty is only that the exact application of these laws leads to equations much too complicated to be soluble. It therefore becomes desirable that </span></span></i><i><span class="Apple-style-span" style="font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">approximate practical methods of applying quantum mechanics should be developed, which can lead to an explanation of the main features of complex atomic systems without too much computation.&#8221;</span></span></i></span></div>
<div><span class="Apple-style-span" style="line-height:19px;font-family:georgia;"><br /></span></div>
<div><span class="Apple-style-span" style="line-height:19px;font-family:georgia;"><span class="Apple-style-span" style="font-size:medium;">It&#8217;s those words &#8220;approximation&#8221;, &#8220;complex&#8221; and &#8220;computation&#8221; that encompass the essence of chemistry, biology and all the other sciences which Dirac did not mention.</span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;"><br /></span></span></span></div>
<div><span class="Apple-style-span" style="line-height:19px;"><span class="Apple-style-span" style="font-size:medium;"><span class="Apple-style-span" style="font-family:georgia;">He may have been right after all.</span></span></span></div>
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		<title>A singular lament</title>
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		<pubDate>Mon, 18 Apr 2011 12:24:00 +0000</pubDate>
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				<category><![CDATA[Ray Kurzweil]]></category>
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		<description><![CDATA[When I was in high school I used to play keyboards in a band. While my own sweet PSR series Yamaha gave me much pleasure, I used to often salivate over some of the high-end models which I could not afford. Among these, keyboards made by the Kurzweil company used to seem especially sophisticated and [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ashujo.wordpress.com&amp;blog=1074294&amp;post=1910&amp;subd=ashujo&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
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<p class="MsoNormal" style="line-height:150%;"><span style="line-height:150%;font-family:Georgia;"><span class="Apple-style-span" style="font-size:x-large;">W</span><span class="Apple-style-span" style="font-size:medium;">hen I was in high school I used to play keyboards in a band. While my own sweet PSR series Yamaha gave me much pleasure, I used to often salivate over some of the high-end models which I could not afford. Among these, keyboards made by the Kurzweil company used to seem especially sophisticated and insanely expensive and the most I could do was occasionally try these out when I attended concerts arranged by friends who were professional musicians.</span></span></p>
<p class="MsoNormal" style="line-height:150%;"><span class="Apple-style-span" style="font-family:Georgia;font-size:medium;">I had absolutely no idea then that the founder of the keyboard company was really known for things that your average keyboard designer could not possibly dream of. </span><span class="Apple-style-span" style="font-family:Georgia;font-size:medium;"><span class="Apple-style-span" style="color:#000000;"><a href="http://en.wikipedia.org/wiki/Ray_Kurzweil">Ray Kurzweil</a></span></span><span class="Apple-style-span" style="font-family:Georgia;font-size:medium;">- child prodigy, engineering genius and inventor of several socially significant technologies like the flatbed scanner and a machine that reads out to the blind, multimillionaire, bestselling author, winner of the National Medal of Technology, founder of myriad start-ups- is best known today as one of the world&#8217;s most high-profile soothsayers. </span><span class="Apple-style-span" style="font-family:Georgia;"><span class="Apple-style-span" style="font-size:medium;">In the pantheon of thinkers who think of technology as a panacea to all our troubles, Kurzweil is certainly at the forefront. </span></span><span class="Apple-style-span" style="font-family:Georgia;font-size:medium;">In his 2005 book </span><span class="Apple-style-span" style="font-family:Georgia;font-size:medium;"><span class="Apple-style-span" style="color:#000000;"><a href="http://www.amazon.com/Singularity-Near-Humans-Transcend-Biology/dp/0143037889/ref=ntt_at_ep_dpt_1">&#8220;The Singularity is Near&#8221;</a></span></span><span class="Apple-style-span" style="font-family:Georgia;font-size:medium;"> he laid out an astonishing version of the future in which mankind&#8217;s intelligence will seamlessly fuse with machine intelligence in an unprecedented, warp-speed event called the &#8220;singularity&#8221;. This would happen no later than 2029. Hearing this, it would be easy to dismiss Kurzweil out-of-hand without further thought as yet another loony new-age guru until you find out that many quite accomplished and clear-thinking individuals including Bill Gates, inventor Dean Kamen and the founders of Google take him quite seriously.</span></p>
<p class="MsoNormal" style="line-height:150%;"><span class="Apple-style-span" style="font-family:Georgia;"><span class="Apple-style-span" style="font-size:medium;">So who exactly is this Raymond Kurzweil? Filmmaker Barry Ptolemy decided to find out and the result is <span class="Apple-style-span" style="color:#000000;"><a href="http://transcendentman.com/">&#8220;Transcendent Man&#8221;</a></span>, a film about Kurzweil which I watched yesterday with a mixture of fascination and disappointment. The film is playing in selected cities but the DVD and a digital download are already available on the movie&#8217;s site. Ptolemy probes into Kurzweil&#8217;s life and finds a brilliant, articulate, curious, </span><span class="Apple-style-span" style="font-size:medium;">sad, haunted man who sheds tears over his father&#8217;s grave, collects cat figurines and undergoes monthly blood tests. Along the way, several individuals who either agree or disagree with Kurzweil are interviewed. Philip Glass&#8217;s haunting, edgy score adds to the allure of this unique individual. Overall Ptolemy does a good job of bringing out Kurzweil&#8217;s essence, although the Glass score could not help but occasionally remind me that Errol Morris would have done an even better job with the film.</span></span></p>
<p class="MsoNormal" style="line-height:150%;"><span class="Apple-style-span" style="font-family:Georgia;font-size:medium;">A child prodigy who built a music-composing computer when he was 17, Kurzweil holds dozens of award-winning patents worth millions. But beneath the success flows a silent undercurrent of emotional upheaval. Kurzweil is a man who had such a close relationship with his father and such a profoundly negative view of death that he has resolved to bring him back from the dead by recreating him from memories and memorabilia about him. He is someone who pops about 200 pills a day in the hope of staying alive at least until the day when his intelligence and personality can be downloaded into a computer so that he could discard this wretched, mortal body that we are all cursed with. And he sincerely believes that the day will arise when our only identity will be online and that using nanotechnology and AI, we will expand our intelligence to span the entire universe in a kind of grand cosmic denouement that will make the universe come alive and allow the human species to achieve immortality.</span></p>
<p class="MsoNormal" style="line-height:150%;"><span class="Apple-style-span" style="font-family:Georgia;"><span class="Apple-style-span" style="font-size:medium;">Yes, it is easy to dismiss Kurzweil as someone who has discovered an unusually liberating new controlled substance. And yet Kurzweil is not your garden variety wild-eyed rapture-seeking bearded madman. In fact, not having seen much of Kurzweil before, I was struck by how </span><i><span class="Apple-style-span" style="font-size:medium;">reasonable</span></i><span class="Apple-style-span" style="font-size:medium;"> and self-assured he appears. Absent are the strenuous gesticulations, defensive maneuvers, dismissive put-downs and jargon-flinging that are the mainstay of snake-oil salesmen like Deepak Chopra. Kurzweil seems genuinely familiar with much of today&#8217;s cutting-edge research in artificial intelligence, nanotechnology, genomics and medical science and lays out his thoughts rather carefully. The problem is that the probability space of his prognostications is highly expansive and inhomogeneous. There are predictions that seem to be within the realm of possibility in a very general sense. There are those which are at least based on currently existing technology. And then there are those that are not just out there but demonstrate a decided failure on Kurzweil&#8217;s part to think things through. Unfortunately that last category dominates Kurzweil&#8217;s thinking to such a significant (and often fatally flawed) extent that while fascinated, I ended up ultimately underwhelmed with both the man and the film.</span></span></p>
<p class="MsoNormal" style="line-height:150%;"><span class="Apple-style-span" style="font-family:Georgia;"><span class="Apple-style-span" style="font-size:medium;">First of all, let me lay down the areas where I do agree with Kurzweil. Unlike some others I don&#8217;t think he is a &#8220;sophisticated crackpot&#8221;; it seems to be more a case of blinkered vision that&#8217;s based on some generally accepted principles. Technological innovation can indeed be exponential and unpredictable. As Kurzweil puts it, it took a very short while (and a very startled Gary Kasparov) before a <span class="Apple-style-span" style="color:#000000;"><a href="http://en.wikipedia.org/wiki/Deep_Blue_(chess_computer)">computer</a></span> was able to defeat a human expert at chess. The twentieth century was the epitome of amazingly rapid technological advancement and most of today&#8217;s innovations would seem like miracles for someone from 1900. The twenty-first century is very likely to witness future such miracles. Most importantly, I agree with Kurzweil that perhaps the </span><i><span class="Apple-style-span" style="font-size:medium;">defining</span></i><span class="Apple-style-span" style="font-size:medium;"> technological event of this century would be the integration of the human body with electronics. This would likely start with simple but breakthrough implements that enable physically and mentally disabled people to access the world around them but would then probably lead to astonishing inventions that allow us to remotely manipulate objects through embedded electronic components. My agreement with Kurzweil also extends to breakthrough medical diagnostics enabled by nanotechnology that allow us to diagnose and treat diseases like cancer at a very easy stage. Nanoparticles are already being used for drug delivery and there is every reason to believe that disorders would be treated in the near future by injecting cell-sized nano-&#8217;robots&#8217; that are about as intelligent in sensing and manipulating their chemical environment as you can imagine. Yes, I am on board with Kurzweil in sharing a sense of wonder at all these possibilities and I suspect that&#8217;s the main reason why so many reasonable people seem to hear him out.</span></span></p>
<p class="MsoNormal" style="line-height:150%;"><span class="Apple-style-span" style="font-family:Georgia;"><span class="Apple-style-span" style="font-size:medium;">So where&#8217;s the glitch? As <span class="Apple-style-span" style="color:#000000;"><a href="http://ng.cba.mit.edu/">Neil Gershenfled</a></span> who knows Kurzweil and directs the Center for Bits and Atoms at MIT puts it, </span><span class="Apple-style-span" style="font-size:medium;">&#8220;What Ray does consistently is to take a whole bunch of steps that everybody agrees on and take principles for extrapolating that everybody agrees on and show they lead to things that nobody agrees on,&#8221; because &#8220;they just seem crazy.&#8221;</span></span></p>
<p class="MsoNormal" style="line-height:150%;"><span class="Apple-style-span" style="font-family:Georgia;"><span class="Apple-style-span" style="font-size:medium;">That is indeed the gist of what&#8217;s wrong. To me Kurzweil&#8217;s thinking seems to suffer from two main…drawbacks (to put it mildly), even ignoring the fantastic nature of his predictions. First of all, he seems to regard historical precedent as virtually sacrosanct. As with many others, Kurzweil&#8217;s starting point is <a href="http://en.wikipedia.org/wiki/Moore's_law">Moore&#8217;s Law </a>which basically applies not just to microelectronics and transistors but also to technologies like genome sequencing and brain-mapping. I think pretty much everyone agrees that the time is not far at all when we could get our genomes sequenced for 100$ apiece. The rate of progress in mapping the activities of single neurons is also very impressive and likely to accelerate. Technology has indeed manifested itself exponentially. But that does not mean that there are no </span><i><span class="Apple-style-span" style="font-size:medium;">limits </span></i><span class="Apple-style-span" style="font-size:medium;">and that every successive stage is as facile as the previous one. Just because we have gotten through eight exponential cycles of technological expansion in thirty years does not automatically mean that the next eight cycles are going to be equally smooth. They may possibly be, but it may well be that the next four cycles are a breeze and then we get really stuck at the fifth stage. Or it may be virtually impossible to overcome the obstacles that we encounter in the third stage. A computer simulating chess is <i>very</i> different from a computer simulating a human brain. Given the complexities of the systems we are dealing with, it&#8217;s virtually impossible to predict the exact course of events that progress might take, no matter how rosy a picture of limitless technological adaptation the past sets up before us. Especially when it comes to our view of future technology, Kurzweil should be the first one to tell us that the past is far from a perfect guide to the future (Or as Niels Bohr put it far more succinctly, &#8220;Prediction is difficult&#8230;especially about the future&#8221;). </span></span></p>
<p class="MsoNormal" style="line-height:150%;"><span class="Apple-style-span" style="font-family:Georgia;"><span class="Apple-style-span" style="font-size:medium;">This brings me to the second and most important problem with Kurzweil&#8217;s predictions, which is that for all his acumen, the man seems to be almost completely unconcerned with </span><i><span class="Apple-style-span" style="font-size:medium;">details</span></i><span class="Apple-style-span" style="font-size:medium;">. You know, the things that can actually matter in developing any kind of science and engineering. This leads to him virtually ignoring all the ways in which thing can go wrong. Consider this: one of the central events in Kurzweil&#8217;s journey to the singularity will occur when we are able to reverse-engineer the human brain. Chew on that a bit. Reverse-engineering the brain entails mapping every connection, every axon, synapse and dendrite inside our remarkable 3-pound &#8216;thin-bone vault&#8217;. And why exactly is Kurzweil so optimistic about this astonishing development? Why, because not only are we making unprecedented progress in mapping neuron activity, but the essence of neural reverse-engineering will be based almost entirely on capturing the genome sequence that codes for the brain. There is so much wrong with this viewpoint that I will leave it to others (for instance see <span class="Apple-style-span" style="color:#000000;"><a href="http://pipeline.corante.com/archives/2010/08/18/reverseengineering_the_human_brain_really.php">Derek Lowe</a></span>, <span class="Apple-style-span" style="color:#000000;"><a href="http://scienceblogs.com/pharyngula/2010/08/ray_kurzweil_does_not_understa.php">PZ Myers</a></span>, <span class="Apple-style-span" style="color:#000000;"><a href="http://luysii.wordpress.com/2011/04/10/would-a-wiring-diagram-of-the-brain-help-you-understand-it/">Luysii</a></span>) to demolish the argument and emphasize the complexity of the brain. I have no doubt that deciphering the genomic basis of neuronal </span><i><span class="Apple-style-span" style="font-size:medium;">connectivity</span></i><span class="Apple-style-span" style="font-size:medium;"> will be a landmark discovery, but for all his engineering genius, Kurzweil seems to be woefully ignorant of the sheer complexity of biology. With this viewpoint he also affirms his membership in the group of starry-eyed optimists who are completely enamored with the &#8220;omics&#8221; revolutions. These optimists seem to equate <i>data</i> with <i>meaning</i>.</span></span></p>
<p class="MsoNormal" style="line-height:150%;"><span class="Apple-style-span" style="font-family:Georgia;"><span class="Apple-style-span" style="font-size:medium;">The genome is the raw material, the </span><i><span class="Apple-style-span" style="font-size:medium;">starting point</span></i><span class="Apple-style-span" style="font-size:medium;"> for any kind of biological organization. If the genomics revolution has taught us anything, it&#8217;s how impoverished our knowledge of biology remains even after sequencing the genome. Most importantly, we have light years to go before we can understand the complex </span><i><span class="Apple-style-span" style="font-size:medium;">signaling networks</span></i><span class="Apple-style-span" style="font-size:medium;"> that functional proteins form with each other and with genes, the subtle and fine-grained interdependencies of the components and networks with each other and the non-linear and  startlingly indirect effects that perturbing these networks can have on physiological processes. Add to these layers of complication the control that <span class="Apple-style-span" style="color:#000000;"><a href="http://en.wikipedia.org/wiki/Epigenetics">epigenetic</a></span> modifications exercise and you have a Dante&#8217;s version of the hell of biological complexity that goes far beyond anything the genome sequence can tell us.</span></span></p>
<p class="MsoNormal" style="line-height:150%;"><span class="Apple-style-span" style="font-family:Georgia;"><span class="Apple-style-span" style="font-size:medium;">And this is where Kurzweil ultimately disappoints. Anyone (and certainly an engineer) who is studying or engineering complex systems knows </span><i><span class="Apple-style-span" style="font-size:medium;">how much the details matter</span></i><span class="Apple-style-span" style="font-size:medium;">. Every bench scientist or code-writer knows how the most unexpected and annoying details can thwart the design of simple experiments. And let&#8217;s not even get started on the details of the technical, existential and ethical problems that true AI would engender. It would be one thing if Kurzweil discussed these problems and gave reasons for why he doesn&#8217;t think they matter. But it&#8217;s quite another when he steers virtually clear from and does not even allude to details and pitfalls. In the absence of recipes for identifying details and solving problems, prognostications are castles in the air, ephemeral beasts whose existence is at the mercy of hard reality. In fact, the same self-assured demeanor that impressed me before later started giving the impression of a man who has cocooned himself into his own little world of beliefs so fully that his world is impervious to doubt. Kurzweil&#8217;s faith is unwavering, criticisms just don&#8217;t seem to count.</span></span></p>
<p class="MsoNormal" style="line-height:150%;"><span class="Apple-style-span" style="font-family:Georgia;font-size:medium;">Among his predictions are the end of aging, the distinct transfer of human intelligence into machines and the unbounded expansion of human intelligence into the entire universe. Many have relegated such dreams to the long-standing bin of human hubris. I myself am not too bothered about the part about hubris; if humans really wanted to give up their conceit and stop asserting their dominance over nature, they have long-since lost the chance. I also don’t have a problem with technological optimism and I take a rather dim view of the criticism of technology as a cure to all our woes; that’s precisely how we as a species have been developing and using technology since the discovery of fire, and as far as we do it responsibly and realistically, it’s a little hypocritical to scream foul murder now when someone proposes grand technological solutions to humanity’s most pressing problems.</span></p>
<p class="MsoNormal" style="line-height:150%;"><span class="Apple-style-span" style="font-family:Georgia;font-size:medium;">No, what disturbs me most about Ray Kurzweil is that, quite apart from his blithe indifference to details and problems, it appears that in his quest to make mankind immortal, Kurzweil is somehow falling prey to the same fears that haunt him. He seems to evince a genuine distaste of death (he wouldn&#8217;t be the first one) and much of his feelings seem to be motivated by the profound feeling of loss he faced after his father&#8217;s death. He says that we lure ourselves into a false feeling of satisfaction by constructing all kinds of myths and comforting stories around death. Perhaps, by postulating mankind&#8217;s and his own immortality by 2029, Kurzweil is doing the same thing?</span></p>
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