Excursions into the mundane and revealing

November 23, 2010

In praise of contradiction

Filed under: atheism,contradiction,modeling,models,reality — ashujo @ 6:57 pm

Scientists usually don’t like contradictions. A contradiction in experimental results is like a canary in a coal mine. It sets off alarm bells and compels the experimentalist to double-check his or her setup. A contradiction in theoretical results can be equally bad if not worse. It could mean you made a simple arithmetical mistake. Contradiction could force you to go back to the drawing board and start afresh. Science is not the only human activity where contradictions are feared and disparaged. A politician or businessman who contradicts himself is not considered trustworthy. A consumer product which garners contradictory reviews raises suspicions about its true value. Contradictory trends in the stock market can put investors in a real bind.

Yet contradiction and paradoxes have a hallowed place in intellectual history. First of all, contradiction is highly instructive simply because it forces us to think further and deeper. It reveals a discrepancy in our understanding of the world which needs to be resolved and encourages scientists to perform additional experiments and decisive calculations to settle the matter. It is only when scientists observe contradictory results that the real fun of discovery begins. It’s the interesting paradoxes and the divergent conclusions that often point to a tantalizing reality which is begging to be teased apart by further investigation.

Let’s consider that purest realm of human thought, mathematics. In mathematics, the concept of proof by contradiction or reductio ad absurdum has been highly treasured for millennia. It has provided some of the most important and beautiful proofs in the field, like the irrationality of the square root of two. In his marvelous book “A Mathematician’s Apology”, the great mathematician G H Hardy paid the ultimate tribute to this potent weapon:

“Reductio ad absurdum, which Euclid loved so much, is one of a mathematician’s finest weapons. It is a far finer gambit than any chess gambit: a chess player may offer the sacrifice of a pawn or even a piece, but a mathematician offers the game.”

However, the great ability of contradiction goes far beyond opening a window into abstract realms of thought. Twentieth-century physics demonstrated that contradiction and paradoxes constitute the centerpiece of reality itself. At the turn of the century, it was a discrepancy in results from blackbody radiation that sparked one of the greatest revolutions in intellectual history in the form of the quantum theory. Paradoxes such as the twin paradox are at the heart of the theory of relativity. But it was in the hands of Niels Bohr that contradiction was transformed into a subtler and lasting facet of reality which Bohr named ‘complementarity’. Complementarity entailed the presence of seemingly opposite concepts whose co-existence was nonetheless critical for an understanding of reality. It was immortalized in one of the most enduring and bizarre paradoxes of all, wave-particle duality. Wave-particle duality taught us that contradiction is not only an important aspect of reality but an indispensable one. Photons of light and electrons behave as both waves and particles. The two qualities seem to be maddeningly at odds with each other. Yet both are absolutely essential to grasp the essence of physical reality. Bohr codified this deep understanding of nature with a characteristically pithy statement- “The opposite of a big truth is also a big truth”. Erwin Schrödinger followed up on his own disdain for complementarity by highlighting an even more bizarre quantum phenomenon- entanglement- wherein particles that are completely separated from each other are nonetheless intimately connected; by doing this Schrödinger brought us the enduring image of a cat helplessly trapped in limbo between a state of life and death.

The creative tension created by seemingly contradictory phenomena and results has been fruitful in other disciplines. Darwin was troubled by the instances of altruism he observed in the wild; these seemed to be contradicting the ‘struggle for existence’ which he was describing. It took the twentieth century and theories of kin selection and reciprocal altruism to fit these seemingly paradoxical observations into the framework of modern evolutionary theory. The history of organic chemistry is studded by efforts to determine the molecular structures of complex natural products like penicillin and chlorophyll. In many of these cases, contradictory proposed structures like those for penicillin spurred intense efforts to discover the true structure. Clearly, contradiction is not only a vital feature of science but it is also a constant and valuable companion of the process of scientific discovery.

These glittering instances of essential contradiction in science would seem perfectly at home with the human experience. While contradiction in science can be disturbing and ultimately rewarding, many religions and philosophies have come to savor this feature of the world for a long time. The Chinese philosophy of Yin and Yang recognizes the role of opposing and contrary forces in sustaining human life. In India, the festival celebrating the beginning of the Hindu new year includes a ritual where every member of the family consumes a little piece of sweet jaggery (solidified sugarcane juice) wrapped in a bitter leaf of the Neem tree (which contains the insecticide azadirachtin). The sweet and bitter are supposed to exemplify the essential combination of happy and sad moments that are necessary for a complete life. Similar paradoxes are recognized in Western theology, for instance pertaining to the doctrines of the Trinity and the Incarnation.

The ultimate validation of contradiction however is not through its role in life or in scientific truth but through its role as an insoluble part of our very psyche. We all feel disturbed by contradiction, yet how many of us think we hold perfectly consistent and mutually exclusive beliefs in our own mind about all aspects of our life? You may love your son, yet his egregious behavior may lead you to sometimes (hopefully not often) wish he had not been born. We often speak of ‘love-hate’ relationships which exemplify opposing feelings toward a loved one. If we minutely observe our behavior at every moment, such observation would undoubtedly reveal numerous instances of contradictory thoughts and behavior. This discrepancy is not only an indelible part of our consciousness but we all realize that it actually enriches our life, makes it more complex, more unpredictable. It is what makes us human.

Why would contradictory thinking be an important part of our psyche? I am no neuroscientist, but I believe that our puzzlement about contradiction would be mitigated if we realize that we human beings perceive reality by building models of the world. It has always been debatable whether the reality we perceive is what is truly ‘out there’ (and this question may never be answered); what is now certain is that neural events in our brains enable us to build sensory models of the world. Some of the elements in the model are more fundamental and fixed while others are flexible and constantly updated. The world that we perceive is what is revealed to us through this kind of interactive modeling. These models are undoubtedly some of the most complex ever generated, and anyone who has built models of complex phenomena would recognize how difficult it is to achieve a perfectly logically consistent model. Model building also typically involves errors, of which some may accumulate and others may cancel. In addition models can always be flawed because they don’t include all the relevant elements of reality. All these limitations lead to models in which a few facts can appear contradictory, but trying to make these facts consistent with each other could possibly lead to even worse and unacceptable problems with the other parts of the model. Simply put, we compromise and end up living with a model with a few contradictions in favor of a model with too many. Further research in neuroscience will undoubtedly shed light on the details of model building done by the brain, but what seems unsurprising is that these models contain some contradictory worldviews which nonetheless preserve their overall utility.

Yet there are those who would seek to condemn such contradictory thinking as an anomaly. In my opinion, one of the most prominent examples of such a viewpoint in the last few years has been the criticism of religious-minded scientists by several so-called ‘New Atheists’ like Richard Dawkins and Sam Harris. The New Atheists have made it their mission to banish what they see as artificial barriers created between science and religion for the sake of political correctness, practical expediency and plain fear of offending the other party. There is actually much truth to this viewpoint, but the New Atheists seem to take it beyond its strictly utilitarian value.

A case in point is Francis Collins, the current director of the NIH. Collins is famous as a first-rate scientist who is also an ardent Catholic. The problem with Collins is not that he is deeply religious but that he tends to blur the line between science and religion. A particularly disturbing instance is a now widely discussed set of slides from a presentation where he tries to somehow scientifically justify the existence and value of the Christian God. Collins’s conversion to a deeply religious man when he apparently saw the Trinity juxtaposed on his view of a beautiful frozen waterfall during a hike is also strange, and at the very least displays a poor chain of causation and inadequate critical thinking.

But all this does not make Collins any less of an able administrator. He does not need to mix science with religion to justify his abilities as a science manager. To my knowledge there is not a single instance of his religious beliefs dictating his preference for NIH funding or policy. In practice if not in principle, Collins manages to admirably separate science from storytelling. But the New Atheists are still not satisfied. They rope in Collins among a number of prominent scientists who they think are ‘schizophrenic’ in conducting scientific experiments during the week and then suspending critical thinking on Sundays when they pray in church. They express incredulity that someone as intelligent as Francis Collins can so neatly compartmentalize his rational and ‘irrational’ brain and somehow sustain two completely opposite – contradictory – modes of thought.

For a long time I actually agreed with this viewpoint. Yet as we have seen before, such seemingly contradictory thinking seems to be a mainstay of the human psyche and human experience. There are hundreds of scientists like Collins who largely manage to separate their scientific and religious beliefs. Thinking about it a bit more, I realized that the New Atheists’ insistence on banishing perfectly mutually exclusive streams of thinking seems to go against a hallowed principle that they themselves have emphasized to no end- a recognition of reality as it is. If the New Atheists and indeed all of us hold reality to be sacrosanct, then we need to realize that contradictory thinking and behavior are essential elements of this reality. As the history of science demonstrates, appreciating contradiction can even be essential in deciphering the workings of the physical world.

Now this certainly does not mean that we should actively encourage contradiction in our thinking. We also recognize the role of tragedy in the human experience, but few of us would strive to deliberately make our lives tragic. Contradictory thinking should be recognized, highlighted and swiftly dealt with, whether in science or life. But its value in shaping our experience should also be duly appreciated. Paradox seems to be a building block in the fabric of the world, whether in the mind of Francis Collins or in the nature of the universe. We should in fact celebrate the remarkable fact that the human mind can subsume opposing thoughts within its function and still operate within the realm of reason. Simply denying this and proclaiming that it should not be so would mean denying the very thing we are striving for- a deeper and more honest understanding of reality.

July 28, 2010

Models, laws and the limits of reductionism

Filed under: complexity,laws,models,reductionism — ashujo @ 2:47 pm

I am currently reading Stuart Kauffman’s “Reinventing the Sacred” and it’s turning out to be one of the most thought-provoking books I have read in a long time, full of mind-bending ideas. Kauffman who was originally trained as a doctor was for many years a member of the famous Institute for Complexity in Santa Fe, which is a bastion of interdisciplinary research.

Kauffman is a kind of polymath who draws upon physics, chemistry, biology, computer science and economics to essentially argue the limitations of reductionism and the existence of emergent phenomena. He makes some fascinating arguments for instance about biology not being reducible to specific physics. One of the main reasons this cannot be done is because the evolution of complex biological systems is contingent and can follow any number of virtually infinite courses depending on slightly different conditions; according to Kauffman, this infinity is not just a ‘countable infinity’ but an ‘uncountable one’ (more on this mind-boggling distinction later). Biological systems are also highly non-linear and full of feedback and ‘surprises’ and these qualities make their prediction not just very difficult in practice but even in principle.

I am sure I will have much more to say about Kauffman’s book later, but for now I want to focus on his argument against reductionism based on what is called the ‘multiple platform’ framework. Kauffman’s basic thesis draws on an argument made by the Nobel laureate Philip Anderson. Anderson wrote a groundbreaking article in Science in 1972 extolling the limits of reductionism. To illustrate the multiple platform principle, he talked about computers processing 1s and 0s and manipulating them to give a myriad number of results. The question is: is the processing of 1s and 0s in a computer uniquely dependent upon the specific physics involved (which in this case would be quantum mechanics)? The answer may seem obvious but Anderson says that it’s hard to make this argument, since one can also get the same results from manipulating buckets that are either empty (0s) or filled with water (1s). Thus, the binary operations of a computer cannot be reduced to specific physics since they can be modeled by ‘multiple platforms’.

Another example that Kauffman cites is of the Navier-Stokes equations, the basic equations of fluid dynamics. The equations are classical and are derived from Newton’s laws. One would think that they would be ultimately reducible to the movements of individual particles of fluid and thus to quantum mechanics. Yet as of today, nobody has found a way to derive the Navier-Stokes equations from those of quantum mechanics. However, the physicist Leo Kadanoff has actually ‘derived’ these equations by using a rather simple ‘toy world’ of beads on a lattice. The movement of fluids and therefore the equations can be modeled by moving the beads around. Thus, we again have an example of multiple platforms leading to the same phenomenon, precluding the unique dependence of the phenomenon on a particular set of laws.

All this is extremely interesting, but I am not sure I follow Kauffman here. The toy world or the bucket brigades that Kadanoff and Anderson talk about are models. Models are very different from physical laws. Sure, there can be multiple models (or platforms) for deriving a given set of phenomena, but the existence of multiple models does not preclude dependence on a unique set of laws. A close analogy which I often think of is from molecular mechanics. A molecular mechanics model of a molecule assumes the molecule to be a classical set of balls and springs, with the electrons neglected. It is supposed to reproduce the properties of molecules like their geometry and energy. By any definition this is a ludicrously simple model that completely ignores quantum effects (or at least takes them into consideration implicitly by getting parameters from experiment). Yet, with the right parametrization, it works well-enough to be useful. There could conceivably be many other models which could give the same results. Yet nobody would make the argument that the behavior of molecules modeled in molecular mechanics is not reducible to quantum mechanics.

Kauffman’s argument that the explanatory arrows don’t always point downwards because one cannot always extrapolate upwards from lower-level phenomena is very well-taken. Emergent properties are surely real. But at least in the specific cases he considers, I am not sure that one can make an argument about phenomena not being reducible to specific physics simply because they can be derived from multiple platforms. The multiple platforms are models. The specific physics constitutes a set of laws, which is quite different.

February 18, 2010

Quo vadis, natural science?

Filed under: models,philosophy of science — ashujo @ 3:46 am

On Wednesday last week the town where I lived got 20 inches of snow in a twenty-four hour period. I got an unexpected, happy, day off work. Bizarrely, southern regions like Washington and Baltimore got much more than northern ones; Baltimore got 40 inches, Philadelphia got about the same. Records were set in both places for the snowiest winters in recent history. People were left wondering and reeling at this capriciousness of the Norse Gods.

So what could be the reason for this sudden onslaught of severe weather? That’s akin to asking what could be the reason for cancer suddenly emerging in someone’s body or for a particular drug demonstrating a slew of side-effects. The reasons are non-obvious, often non-intuitive, complex, multifactorial and extremely hard to determine. And that is also what one should say if asked to elucidate reasons for a particularly snowy winter.

But human beings don’t work that way…

…Read the rest of the post on the Desipundit blog

February 5, 2009

Filed under: causation,correlation,models,taleb — ashujo @ 8:02 pm

BLACK SWANS, MODELS AND REALITY

Nassim Nicholas Taleb’s pioneering books should alert us to the fallacies of model building, an appreciation of the impact of rare events, and our perception of models as reality…

…Read the rest of the post on my Desipundit blog

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